Allow a global path in RemoteData #7
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Owner
zonca
commented
Feb 1, 2022
zonca
commented
- set lmax of smoothing to 3*nside-1
- support for output units
- Imported InterpolatingComponent from so_pysm_models
- implementation of bandpass integration and debug MPI
- update the test suite to match the new API
- support for MapDistribution in InterpolatingComponent
- added mpi examples
- test extragalactic
- trapz for dust
- bandpass integration for InterpolatingComponent
- trapz for spdust
- trapz step inplace jitted funciton
- trapz for power law
- [bugfix] fixed error trapz for unique frequency
- export check_freq_input
- implemented bandpass integration in InterpolatingComponent
- removed placeholder apply_bandpass function
- there are no weights for nside 16 and lower
- attach unit to output if input has a unit
- do not set iter=1
- bugfix in interface
- fixed conflicts
- example run at 4096
- moved mpi_smoothing into mpi.py
- simple CMBMap model and unit test
- ignore .out .log
- job script for popeye
- add memreport
- [bugfix] fix imports in mpi.py
- [bugfix] wrong variable name
- 10 nodes run
- implement trapz in a1 model
- [bugfix] map_dist was not passed along
- weighting in Jy/sr
- simplify test, we are now doing weighting in Jy/sr
- use rotator instead of coord argument
- fixed mpi smoothing
- import mpi smoothing
- weighted average for unit conversion
- moved check_freq_input to utils
- improve docstring of apply smoothing and coord conversion
- implement bandpass unit conversion
- use check_freq_input in bandpass unit conversiona
- fix bandpass unit conversion for single frequency
- link to tutorial
- recognize if we have a identity rotator
- disable debugging print
- new version of astropy gives a slightly different result
- fix typo and run black
- Cache maps in interpolator
- Explain how to clear the cache
- add CMB model c2 from template
- add numba and h5py to requirements for readthedocs
- support both separate and single map in CMBMap
- implementation of lensed CMB model c1
- suppress exception about not providing any input map
- integrate 10 points in bandpass
- allocate MPI shared buffer
- 1 node test to write/read from shared memory
- communication with node communicator on multiple nodes
- completed implementation, slicing local pixels
- remove unused import
- black formatting
- suppress warnings on rank > 0
- remove printing and barrier
- improve read mpi test also check arrays
- simplify MPI, use automatic ranking, add barrier
- use 4096 input maps
- move mpi4py import inside function
- set version to 3.1.dev
- explicitely free the shared memory buffer
- also call the garbage collector
- create fake timelines in MPI example
- imported docs from PySM 2
- link new pages to index
- reconfigure environment for RTD
- moved docs from introduction to index
- removed outdated docs on how to use
- work in progress notice on models
- notebook based tutorial docs
- print doc
- add ipykernel and pandoc on readthedocs
- add pip ad dependency
- switch to version 2 specify python and astropy version
- install the package
- specify kernel name
- point to docs
- mpi docs
- update requirements
- install ipykernel and nbsphinx on Travis
- remove hidden metadata from cell
- remove docs build on travis
- link to notebook tutorials
- mention MPI requirements
- Create LICENSE
- modify name for PyPI
- do not update astropy_helpers at install time (for conda-forge)
- add LICENSE to PyPI package
- tag 3.1.0
- switch version to dev
- Revert "do not update astropy_helpers at install time (for conda-forge)"
- support scalar dust temperature
- implementation of d0 and test
- implementation of d2 and test
- implementation of d3 and test
- build on RTD with Python 3.6
- added documentation for d0
- implement s0 and test
- implement s2 and test
- implemented s3 curved synchrotron
- use sphinx math dollar
- mention PySM 2 paper in summary in homepage
- removed empty files
- removed docstrings from all the get_emission methods
- added get_emission method to base class with docstring
- add conda and pip to installation docs
- Added HD17 model
- Added docs to HD17 method.
- Removed debug print statement
- Reordered shape of get_emission output to (nfreq, npol, npix)
- Ammended for new API calling one channel at a time.
- Refactored get_emission to calculate each frequency individually and accumulate for bandpass average.
- Added some comments
- switch readthedocs to pip
- use newer numpy on travis
- docs: installation instructions in readme and docs
- Add missing requirements (healpy, numba and toml)
- fix d6 model initialization
- fix computation of d6 emission
- add unit test
- fix: always convert input freq to GHz
- fix: run utils.check_input_freq also in interpolating
- feat: return plain np.array from check_freq
- feat: add HD2017 model definition as d7
- test: unit test for HD2017
- fix: remove unused arguments and black formatting
- set version to 3.1.1
- set version to 3.1.dev
- rebuild on latest astropy package template
- update also travis configuration
- set version to 3.1.2
- removed entry_points and requirements.txt
- remove entry-points
- fix: all flake8 style issues
- fix: line length issue
- style: suppress import * warnings
- test: remove tests on windows
- docs: requirements for building docs
- add pandoc to travis
- test: do not test astropy 3.x, too old
- docs: don't fail on warning
- docs: removed templates
- docs: fix link formatting
- test: add Pygments as requirements
- write requirements in README
- Added CHANGES.rst file
- add info about tox
- docs: add executed notebooks for readthedocs
- change package name to pysm3
- back to development
- Added nside overide for template component class
- Added docstring to new read_map nside kwarg
- Added nside_uval arg for hd17 model
- Added docstring for nside_uval arg
- expand docstring for Sky
- fix: units and trailing whitespace
- fix: pep8
- fix: package naming in docs
- docs: add info about PR 37
- PyPI and Conda badges and Astropy
- Update README.rst
- feat: moved hd2017 to its own module
- feat: implementation of the HD2017-based d5 model
- feat: implementation of d8, added uval argument
- feat: explain default for uval in docstring
- feat: implement check local folder first
- use importlib.pkg_resources to load presets.cfg
- fix: add extra requirement for python < 3.7
- docs: updated changelog
- fix: use consistent naming
- docs: add docs for input templates
- docs: link to release guide
- updated CHANGES and change version to 3.2.0
- style: ran black on setup.py
- docs: install at NERSC
- fix url for PyPI
- docs: consolidate installation instructions into docs
- back to development: 3.2.1.dev
- docs: docstring for normalize_units
- fix: update run mpi tests to new setup
- ci: run MPI tests on Travis-CI
- ci: run MPI tests with the env configured by tox
- test: add mpi4py as extra requirement for tests
- ci: run mpi tests only with one tox env
- renamed package to pysm3 and use poetry
- poetry.lock with base test environment
- support multiple numpy versions
- increase version to 3.3.0
- test: do not use poetry in tox
- ci: configure readthedocs for poetry
- update poetry.lock
- update poetry.lock
- package: fix extras
- test: add back setup.cfg for coverage and pytest
- ci: fix folder on Travis
- project details for PyPI
- doc: update CHANGES.rst
- use instead version 3.2.1
- update docs
- filter warnings and pysm3
- doc: update notebooks
- doc: mention renamed package in CHANGES
- doc: removed the example notebook in the repo root
- set date of release
- bump version to 3.2.2
- feat: get version from the package, remove astropy_init
- add dev to version
- feat: print warning and return zero for CIB outside of range
- pkg: add importlib resources for Python 3.6
- ready to release 3.2.2
- feat: set verbose=False to map2alm
- changed bandpass_unit_conversion and add unit test
- feat: use float64 keys for frequency in cached maps dict
- fix: interpolator with no pol was returning IQU
- Revert "fix: interpolator with no pol was returning IQU"
- feat: remove has_polarization for interpolating
- removed from astropy
- feat: handle weights None (tophat)
- tests: import unit conversion unit tests from PySM 2
- feat: support input unit in bandpass_unit_conversion
- feat: allow default weights to None
- fix: normalize weights
- test: compare with planck
- feat: read RIMO from NERSC
- feat: filter out gains too low
- feat: expose cut to API
- fix: codestyle errors
- test: compare with PySM 2
- compare with tod2flux
- compare with tod2flux removing the \nu^-1 IRAS factor
- use utils.bandpass_unit_conversion in CMB
- disable normalization of weights when converting to other units
- fix single frequency conversion
- note about -2 spectral index in dust
- fix: disable weights normalization for CMB
- fix: enabled again normalization to RJ and added docs
- fix: don't use 2: slicing
- packaging: more flexible requirement on numba
- ci: point badge to travis-ci.com
- fix: support scalar freq and mbb_index
- docs: add docs about bandpass integration
- docs: minor improvements, typos
- fix: fix mpi example
- packaging: add requirement on importlib-metadata
- set version to 3.3.0
- removed testing with numpy 1.16
- updated changelog
- point to travis-ci.com
- increase timeout for getting data to 90s
- added documentation for the dust models d7 and d8
- Reproduce PySM 2 templates for Dust (Reproduce PySM 2 templates for Dust galsci/pysm#66)
- disable development version of numpy because it doesn't build on Travis
- remove tags
- Reproduce PySM 2 Synchrotron model s1 (Reproduce PySM 2 Synchrotron model s1 galsci/pysm#71)
- Mention numba threading in docs
- files internal to the package
- imported license from Astropy package template
- import new Astropy package template, remove poetry
- fix requirements
- update Sphinx conf.py
- remove windows
- remove mac os
- add Ubuntu packages
- run MPI test
- remove Travis CI
- remove poetry lock file
- use the tox python
- typo in readthedocs config
- remove docs about poetry
- doc: remove link in docstring
- Github actions status badge
- rename master to main in all docs
- Updated changelog
- docs: fix README typo
- remove mention of poetry in README
- doc: release instructions in README.rst
- remove old license
- authors and start of bibliography
- first full draft
- build paper
- how to cite
- use comma instead of braces
- minor fixes
- give name to paper workflow
- fix citations
- setup linkcheck to run weekly
- Added affiliation and ORCID
- Small language changes
- Nicoletta's affiliation
- fix affiliations
- simplify acknowledgements by @jdborrill
- Standardize grammar structure in bullet point
- Moved repository under galsci Github organization
- Acknowledge computing
- remove weekly linkcheck
- info about support in the README
- contributing guidelines
- change titles
- fix typo in readme
- specify requirements in docs
- link changelog
- fix typo in development installation docs
- added statement of need to paper
- Apply suggestions from code review
- Update paper/paper.md
- replace in the microwave with in the microwave portion of the spectrum
- final spellcheck
- move license to root of repo
- add JOSS badge
- get also tex files in github action
- fix typo in JOSS badge
- Create CITATION
- Reference papers
- Update citation year in README
- Fixed year on Bennett et al. citation
- feat: implemented dust layers model, test trivial case
- fix: codestyle issues
- fix: 1-based numbering for layers
- doc: modify docstring
- Remove doctest-rst option from pytest
- Rewrite test_units.py
- fix: remove unused imports
- Use logging instead of warning
- Log instead of warning for unit
- fix codestyle
- move also bandpass_unit_conversion to logging
- docs: how to handle verbosity
- fix: escape \e that was causing DeprecationWarning
- fix: extract_hdu_unit was leaving FITS file open
- escape back slash
- fix: filter out benign numpy warnings
- fix codestyle
- Filter out AstropyDeprecationWarning
- filter out all numpy benign warnings
- fix: numpy warning, use float32 instead of float
- fix: use filterwarnings instead of simplefilter
- fix: remove unnecessary import
- fix: remove verbose which is deprecated in healpy 1.15
- fix: no need of deprecation warning filter anymore
- test: try to filter warnings in pytest
- mention warnings to logging and JOSS review in changelog
- feat: TOML preset for d12
- fix: minor bugs
- test: started implementing unit test for d12
- test: finalized unit test, doesn't pass
- fix: unit was not set in input layers, test with fixtures
- style: make flake8 happy
- remove old commented code
- [doc] how to install test requirements
- [fix] escape \e to avoid warning
- [docs] mention to install pandoc
- [rtd] install test requirements
- [rtd] switch to python 3.8
- [fix] replace np.int with int
- [docs] better docs for MPI
- [docs] link to MPI tutorial
- [fix] setup mpi requirement
- [fix] fix imports in so pysm model example
- [docs] improve CMBMap
- [docs] reference to docs improvement PR
- [paper] mention tolerance in unit tests
- set release date
- small changes in paper
- [paper] replace journal shortcuts
- [paper] fix bibliography capitalization
- [paper] update CITATION to cite JOSS instead of Arxiv
- docs about d12
- mkd maps are in 2048 folder
- docs: fix link, specify MKD name
- test: implement unit test for remotedata
- test: enable logging in pytest
- run test with global path
We do not have any code block in the documentation See openjournals/joss-reviews#3783 (comment)
Use pytest instead of unittest, simplify using tmp_path
Rewrite test_units.py
Fix warnings in unit tests
Document test and build docs requirements
small changes in paper
[paper] fix bibliography capitalization
Dust model (3D) with multiple layers d12
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.